WSEAS Transactions on Applied and Theoretical Mechanics


Print ISSN: 1991-8747
E-ISSN: 2224-3429

Volume 12, 2017

Notice: As of 2014 and for the forthcoming years, the publication frequency/periodicity of WSEAS Journals is adapted to the 'continuously updated' model. What this means is that instead of being separated into issues, new papers will be added on a continuous basis, allowing a more regular flow and shorter publication times. The papers will appear in reverse order, therefore the most recent one will be on top.


Volume 12, 2017



Fluctuations of Pigment’s Dipole Moment Orientations in B850 Ring from Photosynthetic Complex LH2

AUTHORS: Pavel Herman, David Zapletal, Jan Loskot, Andrea Hladikova

Download as PDF

ABSTRACT: Properties of light–harvesting (LH) pigment–protein complexes are strongly influenced by interactions with environment. Some of these interactions could be modeled by different types of static disorder. Slow fluctuations of bacteriochlorophyll’s dipole moment orientations represent one possible type of static disorder in B850 ring from LH2 complex of purple bacteria. This type of static disorder is investigated in present paper. Two modifications of such uncorrelated static disorder type (Gaussian fluctuations of dipole moment orientations in the ring plane and Gaussian fluctuations of dipole moment orientations in a plane which is perpendicular to the ring one) are taking into account. The nearest neighbour transfer integral distributions for different strengths of static disorder are presented and the most important statistical properties are calculated, discussed and compared.

KEYWORDS: LH2 complex, B850 ring, static disorder, Hamiltonian, transfer integral distributions

REFERENCES:

[1] D. W. Lawlor, Photosynthesis, Spriger, New York 2001.

[2] R. van Grondelle and V. I. Novoderezhkin, Energy transfer in photosynthesis: experimental insights and quantitative models, Phys. Chem. Chem. Phys. 8, 2003, pp. 793–807.

[3] G. McDermott, et al., Crystal structure of an integral membrane light-harvesting complex from photosynthetic bacteria, Nature 374, 1995, pp. 517–521.

[4] M. Z. Papiz, et al., The structure and thermal motion of the B 800-B850 LH2 complex from Rps. acidophila at 2.0 A resolution and 100 K: new structural features and functionally relevant motions, J. Mol. Biol. 326, 2003, pp. 1523– 1538.

[5] K. McLuskey, et al., The crystalographic structure of the B800–820 LH3 light-harvesting complex from the purple bacteria Rhodopseudomonas acidophila strain 7050, Biochemistry 40, 2001, pp. 8783–8789.

[6] W. P. F. de Ruijter, et al., Observation of the Energy–Level Structure of the Low– Light Adapted B800 LH4 Complex by Single– Molecule Spectroscopy, Biophys. J. 87, 2004, pp. 3413–3420.

[7] A. W. Roszak, et al., Crystal structure of the RCLH1 core complex from Rhodopseudomonas palustris, Science 302, 2003, pp. 1976–1972.

[8] R. Kumble and R. Hochstrasser, Disorder– induced exciton scattering in the light– harvesting systems of purple bacteria: Influence on the anisotropy of emission and band → band transitions, J. Chem. Phys. 109, 1998, pp. 855–865.

[9] V. Nagarajan, et al., Femtosecond pump–probe spectroscopy of the B850 antenna complex of Rhodobacter sphaeroides at room temperature, J. Phys. Chem. B 103, 1999, pp. 2297–2309.

[10] V. Nagarajan and W. W. Parson, Femtosecond fluorescence depletion anisotropy: Application to the B850 antenna complex of Rhodobacter sphaeroides, J. Phys. Chem. B 104, 2000, pp. 4010–4013.

[11] V. Cˇ apek, I. Barv ´ ´ık and P. Heˇrman, Towards proper parametrization in the exciton transfer and relaxation problem: dimer, Chem. Phys. 270, 2001, pp. 141–156.

[12] P. Heˇrman and I. Barv´ık, Towards proper parametrization in the exciton transfer and relaxation problem. II. Trimer, Chem. Phys. 274, 2001, pp. 199–217.

[13] P. Heˇrman, I. Barv´ık and M. Urbanec, Energy relaxation and transfer in excitonic trimer, J. Lumin. 108, 2004, pp. 85–89.

[14] P. Heˇrman, et al., Exciton scattering in light– harvesting systems of purple bacteria, J. Lumin. 94–95, 2001, pp. 447–450.

[15] P. Heˇrman and I. Barv´ık, Non–Markovian effects in the anisotropy of emission in the ring antenna subunits of purple bacteria photosynthetic systems, Czech. J. Phys. 53, 2003, pp. 579–605.

[16] P. Heˇrman, et al., Influence of static and dynamic disorder on the anisotropy of emission in the ring antenna subunits of purple bacteria photosynthetic systems, Chem. Phys. 275, 2002, pp. 1–13.

[17] P. Heˇrman and I. Barv´ık, Temperature dependence of the anisotropy of fluorescence in ring molecular systems, J. Lumin. 122–123, 2007, pp. 558–561.

[18] P. Heˇrman, D. Zapletal and I. Barv´ık, Computer simulation of the anisotropy of fluorescence in ring molecular systems: Influence of disorder and ellipticity, Proc. IEEE 12th Int. Conf. on Computational Science and Engineering, Vancouver: IEEE Comp. Soc., 2009, pp. 437–442.

[19] P. Heˇrman and I. Barv´ık, Coherence effects in ring molecular systems, Phys. Stat. Sol. C 3, 2006, 3408–3413.

[20] P. Heˇrman, D. Zapletal and I. Barv´ık, The anisotropy of fluorescence in ring units III: Tangential versus radial dipole arrangement, J. Lumin. 128, 2008, pp. 768–770.

[21] P. Heˇrman, I. Barv´ık and D. Zapletal, Computer simulation of the anisotropy of fluorescence in ring molecular systems: Tangential vs. radial dipole arrangement, Lecture Notes in Computer Science 5101, 2008, pp. 661–670.

[22] P. Heˇrman, D. Zapletal and I. Barv´ık, Lost of coherence due to disorder in molecular rings, Phys. Stat. Sol. C 6, 2009, pp. 89–92.

[23] P. Heˇrman, D. Zapletal and J. Sl ˇ egr, Comparison ´ of emission spectra of single LH2 complex for different types of disorder, Phys. Proc. 13, 2011, pp. 14–17.

[24] D. Zapletal and P. Heˇrman, Simulation of molecular ring emission spectra: localization of exciton states and dynamics, Int. J. Math. Comp. Sim. 6, 2012, pp. 144–152.

[25] M. Horak, P. He ´ ˇrman and D. Zapletal, Simulation of molecular ring emission spectra – LH4 complex: localization of exciton states and dynamics, Int. J. Math. Comp. Sim. 7, 2013, pp. 85–93.

[26] P. Heˇrman and D. Zapletal, Intermolecular coupling fluctuation effect on absorption and emission spectra for LH4 ring, Int. J. Math. Comp. Sim. 7, 2013, pp. 249–257.

[27] M. Horak, P. He ´ ˇrman and D. Zapletal, Modeling of emission spectra for molecular rings – LH2, LH4 complexes, Phys. Proc. 44, 2013, pp. 10– 18.

[28] P. Heˇrman, D. Zapletal and M. Horak, Emis- ´ sion spectra of LH2 complex: full Hamiltonian model, Eur. Phys. J. B 86, 2013, art. no. 215.

[29] P. Heˇrman and D. Zapletal, Emission Spectra of LH4 Complex: Full Hamiltonian Model, Int. J. Math. Comp. Sim. 7, 2013, pp. 448–455.

[30] P. Heˇrman and D. Zapletal, Simulation of Emission Spectra for LH4 Ring: Intermolecular Coupling Fluctuation Effect, Int. J. Math. Comp. Sim. 8, 2014, pp. 73–81.

[31] D. Zapletal and P. Heˇrman, Photosynthetic complex LH2 – Absorption and steady state fluorescence spectra, Energy 77, 2014, pp. 212–219.

[32] P. Heˇrman and D. Zapletal, Simulations of emission spectra for LH4 Ring – Fluctuations in radial positions of molecules, Int. J. Biol. Biomed. Eng. 9, 2015, pp. 65–74.

[33] P. Heˇrman and D. Zapletal, Computer simulation of emission and absorption spectra for LH2 ring, LNEE 343, 2015, pp. 221–234.

[34] P. Heˇrman and D. Zapletal, Modeling of Absorption and Steady State Fluorescence Spectra of Full LH2 Complex (B850 – B800 Ring), Int. J. Math. Mod. Meth. Appl. Sci. 9, 2015, pp. 614– 623.

[35] P. Heˇrman and D. Zapletal, Modeling of Emission and Absorption Spectra of LH2 Complex (B850 and B800 Ring) – Full Hamiltonian Model, Int. J. Math. Comp. Sim. 10, 2016, pp. 208–217.

[36] P. Heˇrman and D. Zapletal, B–α/B–β Ring from Photosynthetic Complex LH4, Modeling of Absorption and Fluorescence Spectra, Int. J. Math. Comp. Sim. 10, 2016, pp. 332–344.

[37] P. Heˇrman and D. Zapletal, B850 Ring from Photosynthetic Complex LH2 - Comparison of Different Static Disorder Types, Int. J. Math. Comp. Sim. 10, 2016, pp. 361–369.

[38] P. Heˇrman and D. Zapletal, Fluctuations of Bacteriochlorophylls Positions in B850 Ring from Photosynthetic Complex LH2 Int. J. Math. Comp. Sim. 10, 2016, pp. 381–389.

[39] P. Heˇrman, I. Barv´ık and D. Zapletal, Energetic disorder and exciton states of individual molecular rings, J. Lumin. 119–120, 2006, pp. 496–503.

[40] C. Hofmann, T. J. Aartsma and J. Kohler, En- ˝ ergetic disorder and the B850–exciton states of individual light–harvesting 2 complexes from Rhodopseudomonas acidophila, Chem. Phys. Lett. 395, 2004, pp. 373–378.

WSEAS Transactions on Applied and Theoretical Mechanics, ISSN / E-ISSN: 1991-8747 / 2224-3429, Volume 12, 2017, Art. #14, pp. 105-112


Copyright © 2017 Author(s) retain the copyright of this article. This article is published under the terms of the Creative Commons Attribution License 4.0

Bulletin Board

Currently:

The editorial board is accepting papers.


WSEAS Main Site